Shobhita Shah
Ghaziabad,Delhi-NCR
Summary
Persistent learner with understanding of functional and technical requirement. A self-motivated individual with an innate curiosity for exploring and experimenting with complex biological data.
Overview
3
3
years of professional experience
5
5
years of post-secondary education
Work History
Senior Research Fellow
Central Molecular Laboratory, GIPMER
Delhi, Delhi
06.2023 - Current
- QC and Analysis of microRNA expression data of Acute Pancreatitis
- Methylome data analysis, methykit and CHIPSeeker
- Data manipulation with R and Python
- Establishment of Methylome Panel for validation
- Data manipulation with R and python
- Research article on Methylation expression data ell free DNA and genomic DNA of acute myocardial infarction
Bioinformatician
Central Molecular Laboratory, GIPMER
Delhi, Delhi
06.2022 - 05.2023
- Quality check of whole exome data
- Processing of fastq files to vcf
- Genomic data analysis pipeline automation
- MicroRNA sequencing data analysis from SRA
- Systematic review on miRNA in Acute Pancreatitis
Bioinformatician
miBiome Therapeutics
Mumbai, Maharashtra
03.2022 - 05.2022
- Whole exome sequence analysis
- Automation in bash
- Installation and building of singularity containers
Bioinformatics Analyst
Shivom- Omics Platform UK based company
Bengaluru
05.2021 - 02.2022
- PGP UK data explored, collected and documented the data from SRA,ENA,DDBJ for market place.
- Assisted in automation of nextflow pipeline
- Testing of existing pipeline: GWAS, WES, RNASeq, MAGMA
- Data curation of microbiome data as per client requirement
- Collaborated with the UI team to provide better workflow, testing and DataMarket Place architecture.
Bioinformatics Intern
Shivom- Omics platform UK based comapany
Bangalore
01.2021 - 04.2021
- Learnt working with AWS-EC2 and S3.
- Knowledge transfer and workflow of platform
- Literature mining for gut microbiome database
Education
M.Sc. - Systems Biology And Bioinformatics
Panjab University
Chandigarh 08.2018 - 08.2020
B.Sc. - Botany
Kirorimal College
University Of Delhi 07.2015 - 06.2018
Skills
- Tools & Databases : NCBI, ENA, SRA, GEO, KEGG, TCGA, VMH, MASI, PGP UK, PDB, DAVID, KEGG, Reactome, Cytoscape(Cytohubba, MCODE), GATK analysis toolkit, STRING, Swiss PDB viewer, Autodock, Prinseq, Lotus, Mothur, FASTQC, Trimmomatic, FastP,
- Programming languages: Python , Bash, R
- NGS analysis: Genome and transcriptome data
- Linux Administration (Instance Management)
- Illumina Sequencer and Server handling
Languages
Hindi
Bilingual or Proficient (C2)
English
Bilingual or Proficient (C2)
Publication
- Acute Pancreatitis in era of bigdata: An miRNA Perspective [JGH-02387-2023]
Timeline
Senior Research Fellow
Central Molecular Laboratory, GIPMER
06.2023 - Current
Bioinformatician
Central Molecular Laboratory, GIPMER
06.2022 - 05.2023
Bioinformatician
miBiome Therapeutics
03.2022 - 05.2022
Bioinformatics Analyst
Shivom- Omics Platform UK based company
05.2021 - 02.2022
Bioinformatics Intern
Shivom- Omics platform UK based comapany
01.2021 - 04.2021
M.Sc. - Systems Biology And Bioinformatics
Panjab University
08.2018 - 08.2020
B.Sc. - Botany
Kirorimal College
07.2015 - 06.2018
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