SHUBHAM KAUSHIK

Bioinformatics postgraduate with more than 4 year experience on Mass Spectrometry based proteomics and metabolomics experiments and analysis. Problem-solving individual working successfully in fast-paced environments, Offering sharp Mass spectrometry and interpersonal skills. Collaborative team player with excellent leadership and communication skills. Seeking a Ph.D. position to contribute in Proteomics and metabolomics research.

• Represented ThermoFisher Scientific and GBU to Rt Hon Boris Johnson MP during India visit during July, 2022.
• Recipient of DBT BTISnet studentship fellowship during Internship at IARI, 2019
• Secured University Rank-1 during Bachelor of Science (Biochemistry) in 2017.

• Worked on project entitled "PPlncRNAdb: Putative peptides translated from non-coding RNAs in plants" at Bioinformatics facility under supervision of Dr. Amrendra Sharma at ICAR-IARI, New Delhi
• Completed 2 month training in Clinical Biochemistry lab, VMMC and Safdarjung Hospital, New Delhi.

• Worked on project entitled "PPlncRNAdb: Putative peptides translated from non-coding RNAs in plants" at Bioinformatics facility under supervision of Dr. Amrendra Sharma at ICAR-IARI, New Delhi
• Completed 2 month training in Clinical Biochemistry lab, VMMC and Safdarjung Hospital, New Delhi.

Technical Skills

• Technical Proficiency: Experienced in advanced laboratory techniques, including Mass Spectrometry and Chromatography, with proficiency in data analysis software.
• Programming Skills: Fluent in R and perl languages and function packages used for mass spectrometry based Omics data analysis.
• Method development: Experienced in targeted method development for clinical
• Expertise in Sample Preparation: Sample preparation for Secretomics, Interactomics, In sol (SP3, SP4 and On column digestions) and In Gel digestions for Proteomics, Phosphoenrichment on tissues (heart valve tissues, liver tissue, muscle tissues etc.), mammalian and bacterial cell lines using TiO2 magnetic beads.
• Experience on Quantitative proteomics approaches: completed major projects with Label-free quantitation, iTRAQ, TMT and few projects with Dimethyl labeling.

Professional Competencies:

• Teamwork, Leadership and Management: Demonstrated ability to manage lab operations and lead teams effectively with teamwork, overseeing wet lab work, bioinformatics, and LCMS operations.
• Problem-Solving: Skilled in developing protocols and procedures to optimize research workflows and achieve project goals.
• Communication: Strong communicator with a collaborative approach, working closely with interdisciplinary teams to support research endeavors.
• Adaptability: Adaptable to dynamic work environments, resilient in overcoming challenges, and ensuring timely project completion.

• Choudhary, M., Kaushik, S., Kapil, A., Shrivastava, R., Vashistt, J., 2022. Decoding Acinetobacter baumannii biofilm dynamics and associated protein markers: proteomic and bioinformatics approach. Archives of Microbiology 204. https://doi.org/10.1007/s00203-022-02807-y
• Singh, D., Yadav, R., Kaushik, S., Wadhwa, N., Kapoor, S., Kapoor, M., 2020. Transcriptome Analysis of ppdnmt2 and Identification of Superoxide Dismutase as a Novel Interactor of DNMT2 in the Moss Physcomitrella patens. Frontiers in Plant Science 11. https://doi.org/10.3389/fpls.2020.01185
• Virmani, S., Arora, A., Kaushik, S., Suman, A., 2023. Lignin Degradation by Isolated Lignolytic Acinetobacter baumanii S2, Aspergillus niger SF4 and Rhodotorula glutinis and Profiling Products from Bio-Valorization Perspective. Waste and Biomass Valorization 15, 101–114. https://doi.org/10.1007 /s12649-023-02140-5
• Singh, J., Kaushik, S., Maharana, C., Jhingan, G.D., Dhar, D.W., 2023. Elevated inorganic carbon and salinity enhances photosynthesis and ATP synthesis in picoalga Picocystis salinarum as revealed by label free quantitative proteomics. Frontiers in Microbiology 14. https://doi.org/10.3389/fmicb.2023.1059199

Walking, Listening Music, Watching movies, analytical thinking etc.