Summary
Overview
Work History
Education
Skills
Certification
Publications
Abstracts and Presentations
Accomplishments
Languages
References
Timeline
SURESH PALANIVEL

SURESH PALANIVEL

Researcher
Tampere

Summary

Experienced research scientist with a background in cancer and molecular biology. Efficient to perform experiments in in-vitro, in-silico and in-vivo techniques. Capable of implementing and troubleshooting experiments. Expert in research data analysis and management. Ability to write, review and revise manuscripts and maintain SOP's. Thrive on multi-tasking and challenges.

Overview

11
11
years of professional experience
1
1
Certification

Work History

Doctoral Student

Tampere University
Tampere
02.2016 - 08.2022
  • Doctoral Dissertation "Evaluation of cytotoxic effects and underlying mechanisms of phenolic compounds on breast cancer cell lines"
  • Maintain cell lines and prepare cell for drug treatment
  • Perform cytotoxicity assay to measure the toxicity
  • Perform CASPASE assay to determine the apoptosis
  • Perform AO/ETBR and FACS to study the different cell population of apoptosis
  • Perform fluorescence microscopy for staining techniques
  • Extract DNA/RNA samples from cell cultures.
  • Perform RT-PCR to determine the gene expression
  • Perform computational models such molecular docking and molecular dynamic simulation to understand the molecular interactions between the ligand and the receptors

Visiting Researcher

Alagappa University
Karaikudi
12.2020 - 05.2021
  • Research Topic "Predicting the potential drugs against breast cancer using advanced computational tools"
  • Perform molecular docking to study the interactions
  • Perform molecular dynamic simulations to study the stability of the interactions and the conformational changes
  • Perform MMGBSA to evaluate the free binding energy of the interactions

Visiting Researcher, Erasmus Mobility Researcher

School of Pharmacy, University of Camerino
Camerino
06.2016 - 05.2017
  • Research Topic "Predicting the efficacy of the Non-nucleoside Agonists at the A2A Adenosine Receptor"
  • Maintain cell lines and prepare cell for drug treatment
  • Perform cytotoxicity assay to measure the toxicity
  • Perform RT-PCR to determine the gene expression
  • Perform computational models such molecular docking and molecular dynamic simulation to understand the molecular interactions between the ligand and the receptors

Project Researcher

Faculty of Medicine, Health Technology, Tampere University
Tampere
12.2014 - 01.2016

Research Topic "Cross Disease Analysis of pathways related to neurodegenerative diseases"

  • Perform modeling of GPR17 as a target receptor
  • Perform ligand preparation
  • Perform molecular docking to determine interactions between the ligand and receptor
  • Perform molecular dynamic simulations to determine the stability of the interactions
  • Perform transient transfection of plasmid pcDNA3.1-hGPR17
  • Perform measurement of secondary messenger cAMP

Junior Research Fellow

Aravind Medical Research Foundation
Madurai
11.2013 - 09.2014

Research Topic "Functional genomics and proteomics of fungal pathogenome and host immune response to fungal infection in human mycotic keratitis"

  • Maintain cell lines and prepare cells for various experiments
  • Perform 2D-SDS PAGE to isolate the proteins
  • Perform Western Blotting to separate and identify proteins
  • Perform ingel tryptic digestion for sample preparation in LC MS/MS
  • Prepare patients sample for tear proteomic analysis


Researcher

R&D, Hertz Pharmaceuticals
Madurai
01.2013 - 11.2013
  • Establishment of quality systems that are maintained and followed as per GMP/GLP norms
  • Coordinating with all cross function teams like Administration, Engineering, Supply chain management, and etc. for the User team (Science team) requirements
  • Assist in safety related work streams as per requirement
  • Inventory management of chemicals, consumables etc.

Research Student

Edinburgh Napier University
Ediburgh
12.2011 - 06.2012

Research Topic "Macrophage-mediated Lung Damage by Nano Particles"

  • Perform Carbon Bulkparticles and Nanoparticles preparation
  • Perform LDH Cytotoxicity Assay to determine cellular cytotoxicity
  • Perform MTT assay to assess cell metabolic activity
  • Perform microscopic analysis to determine the morphology of the cells

Research Student

University of Madras
Madras
12.2009 - 04.2010

Research Topic "Isolation of endophytic fungi from a medicinal plant Guazuma tomentosa L., with special reference to anti-microbial activity and taxol production"

  • Perform Isolation of Endophytic Fungi
  • Perform Radial Growth Analysis of Phomopsis sp.,
  • Perform extraction of Taxol
  • Perform Thin Layer Chromatography
  • Perform High Pressure Liquid Chromatography
  • Perform Infra-Red Spectroscopy and Ultra-Violet Spectroscopy
  • Perform screening of Anti-Bacterial Activity of crude extracts of Phomopsis sp.,

Education

D.Sc (Tech) - Biomedical Science and Engineering

Tampere University, Tampere, Finland
08.2022

Master of Science - Biotechnology

Edinbuegh Napier University, Edinburgh, United Kingdom
06.2012

B.Tech - Biotechnology

Kamaraj College of Engineering And Technology, Virudhunagar, India
04.2010

Skills

  • Animal Cell culture techniques
  • FELASA (Certified Laboratory Animal Scientist)
  • Western blotting and other protein analysis technique
  • Flow cytometry staining and techniques
  • RTPCR and other gene expression techniques
  • Immunofluorescence and immunohistochemistry staining and analysis of tissue and cell samples
  • Confocal and Fluorescence microscopy, image acquisition and analysis
  • Molecular docking and molecular dynamic simulation in computational modeling
  • Good Laboratory Practices (GLP) and Research Protocol Development
  • Scientific paper, grant and professional presentation preparation
  • Microsoft Office, Presentation Software (PowerPoint, Prezi), Spreadsheets (Excel), Communication (Skype, Teams & Zoom)

Certification

FELASA F052/15 (ID - 07/2022)

  • Certificated Laboratory Animal Scientist, (Species: Rat, Mouse, and Fish; Functions: A, B, C & D)

Diploma

  • Advanced Training in Confocal Microscopy, Neuro Group, Tampere University, Finland.
  • Advanced Training in Molecular Biology and Recombinant DNA Technology (Diploma), Sangenomics, Bangalore, India.

Publications

1. Palanivel S, Yli-Harja O, Kandhavelu M, (2020) Molecular interaction study of novel indoline derivatives with EGFR-kinase domain using multiple computational analysis, J. Biomol. Struct. Dyn.; 1-10. DOI: 10.1080/07391102.2021.19009172

2. Palanivel S, Murugesan A, Yli-Harja O, and Kandhavelu M, (2020), Anticancer activity of THMPP: Downregulation of PI3K/ S6K1 in breast cancer cell line, Saudi Pharm J.; 28(4), 495-503. DOI: 10.1016/j.jsps.2020.02.015

3. Palanivel S, Murugesan A, Subramanian K, Yli-Harja O, and Kandhavelu M, (2020), Antiproliferative and apoptotic effects of indole derivative, N-(2-hydroxy-5-nitrophenyl (4'-methyl phenyl) methyl) indoline in breast cancer cells, Eur J Pharmacol; 21;881:173195. DOI: 10.1016/j.ejphar.2020.173195

4. Palanivel S, Yli-Harja O, and Kandhavelu M, (2020), Alkylamino phenol derivative induces apoptosis by inhibiting EGFR signaling pathway in breast cancer cells, Anticancer Agents Med Chem; 20(7):809-819 DOI: 10.2174/1871520620666200213101407

5. Konda Mani S, Palanivel S, Yli-Harja O and Kandhavelu M., (2018) Identification of novel GPR17-agonists by structural bioinformatics and signaling activation, Int J Biol Macromol., 106:901-907 DOI: 10.1016/j.ijbiomac.2017.08.0886

6. Palanivel S, Zhurina A, Doan P, Chandraseelan J G, Megraj Khandelwal V K, Zubkov F, Mahmudov K, Pombeiro A, Yli-Harja O, and Kandhavelu M, (2018) In vitro characterization of aryl hydrazones of active methylene derivatives, Saudi Pharm J., 26(3):430-436. DOI: 10.1016/j.jsps.2017.12.018

7. Kandhavelu J, Palanivel S, and Kandhavelu M, (2017), Aberrantly Binding microRNAs and their Interactions with Nuclear Hormone Receptors, MicroRNA, 6, 1-8. DOI: 10.2174/2211536606666170724155252

Abstracts and Presentations

1. Palanivel S, Yli-Harja O, and Kandhavelu M, (2019), Developing a Quantitative structure-activity relationship model to understand the anticancer activity of Indoline, Morpholine, and Phenolic derivatives against breast cancer cell lines, Second International Conference on Signals Systems and Communication – ICSSC 2019, India.

2. Palanivel S, (2017), Investigation of small molecule interaction with receptors in cancer therapy, Journal of Stem Cell Res and Ther, 7:9

3. Palanivel S, Yli-Harja O, and Kandhavelu M, (2017), QSAR and Molecular Docking Analysis of synthetic compounds against Breast Cancer Targets, INDO-GERMAN Workshop on Computing in Chemistry, Biology, and Medicine, CCBM2017, 11, Poster Presentation, Hyderabad, India, 29.11.2017

4. Palanivel S, Investigation of small molecule effects in human embryonic kidney cell lines, BioMediTech Research Day, 43, Poster Presentation, Finland, 4.12.2015

5. Palanivel S, Analysis of Ca2+ and cAMP signaling regulated by GPR17 at the single-cell level, BioMediTech Research Day, 88, Poster Presentation, Finland, 5.12.2014

6. Palanivel S, Recent Development in Magnetic Resonance Imaging, 2nd National Symposium on Current Trends in Biotechnology, Oral Presentation, India, 13.07.2008.

7. Palanivel S, Recent development in Combined Proteomics and Transcriptomics approach, International Conference on Transcriptomics, Poster Presentation, India on 18.01.2008.

Accomplishments

    04/16 – 02/17 Erasmus Mobility Researcher, Tampere University, Finland

    06/15 – 03/16 CIMO Fellowship TM-15-9720, Tampere University, Finland

    03/15 – 05/15 University Funding, Tampere University, Finland

    12/14 – 02/15 FiDiPro Zhang Award, Tampere University, Finland

    12/13 – 11/14 Junior Research Fellow, Aravind Medical Research Foundation, India

Languages

Tamil
Bilingual or Proficient (C2)
English
Bilingual or Proficient (C2)
Finnish
Beginner (A1)

References

Prof. Olli Yli-Harja Email: olli.yli-harja@tuni.fi

Head of Computational Systems Biology, Faculty of Medicine and Health Technology, Tampere University, Tampere-33101.

Dr. Meenakshisundaram K Email: meenakshisundaram.kandhavelu@tuni.fi

Adjunct Professor/Head of MSLab, Faculty of Medicine and Health Technology, Tampere University, Tampere-33101.

Dr. Kavita Pal Email: kpal@actrec.gov.in

Scientist D Advanced Centre for Treatment, Research, and Education in Cancer, Tata Memorial Centre, Maharashtra, - 410210

Timeline

Visiting Researcher - Alagappa University
12.2020 - 05.2021
Visiting Researcher, Erasmus Mobility Researcher - School of Pharmacy, University of Camerino
06.2016 - 05.2017
Doctoral Student - Tampere University
02.2016 - 08.2022
Project Researcher - Faculty of Medicine, Health Technology, Tampere University
12.2014 - 01.2016
Junior Research Fellow - Aravind Medical Research Foundation
11.2013 - 09.2014
Researcher - R&D, Hertz Pharmaceuticals
01.2013 - 11.2013
Research Student - Edinburgh Napier University
12.2011 - 06.2012
Research Student - University of Madras
12.2009 - 04.2010
Tampere University - D.Sc (Tech), Biomedical Science and Engineering
Edinbuegh Napier University - Master of Science, Biotechnology
Kamaraj College of Engineering And Technology - B.Tech, Biotechnology

FELASA F052/15 (ID - 07/2022)

  • Certificated Laboratory Animal Scientist, (Species: Rat, Mouse, and Fish; Functions: A, B, C & D)

Diploma

  • Advanced Training in Confocal Microscopy, Neuro Group, Tampere University, Finland.
  • Advanced Training in Molecular Biology and Recombinant DNA Technology (Diploma), Sangenomics, Bangalore, India.
SURESH PALANIVELResearcher